Found this list "LIST OF SPECIAL INSTITUES IN ISLAMABAD" at
http://www.facebook.com/notes/safetyaid-co/list-of-special-institues-in-islamabad/130574453633061
Many of these probably are just schools and don't provide training, but they're still worth a look
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Al-Farabi Special Education Centre for Physically Handicapped Children Opp: ( Nori Hospital, G-8/4, Islamabad. Tel: 9260858 )
2 Al-Maktoom Special Education Center for Visually, Handicapped Children ( Rooh Afza Market, St. No. 14, G-7/2, Islamabad Tel: 9204999 )
3 Fatima Jinnah Special Education Center for Mentally Retarded Children ( H-8/4, Islamabad. Tel: 9257156)
4 Ibn-e-Sina Special Education Center for Mentally Retarded Children ( H-8/4, Islamabad. Tel: 9257323)
5 National Braille Press (Pakistan) (G-7/2, Near Rooh Afza Market, Islamabad. Tel: 9216566 )
6 National Institute of Special Education (Pakistan) (Near Rooh Afza Market, G-7/2, Islamabad. Tel: 9201566 )
7 National Library and Resource Centre ( G-7/2, Islamabad. Tel: 9222734 )
8 National Mobility and Independent Training Centre ( G-7/2, Near Rooh Afza Market, Islamabad. Tel: 9216566 )
9 National Special Education Center for Hearing Impaired Children (H-9, Islamabad. Tel: 9257437 )
10 National Training Centre for Special Persons (Opp: Nori Hospital, G-8/4, Islamabad. Tel: 9260098)
11 Vocational Rehabilitation and Employment of Disabled Persons (H-8, Islamabad Tel: 9257155 )
12 Vocational Rehabilitation and Employment of Disabled Persons (Service Centre-I)
(H-8/4, Near Commerce College, Islamabad Tel: 9257155 )
..
15 Special Education Centre for Physically Handicapped Children (N. No. E-115, Satellite Town, Rawalpindi Tel: 4455241)